recipe stacks

Stacks is a software pipeline for building loci from RAD-seq

Homepage

http://catchenlab.life.illinois.edu/stacks/

License

GPL

Recipe

/stacks/meta.yaml

Links

biotools: Stacks, doi: 10.1111/mec.12354

package stacks

Versions

2.4-1, 2.4-0, 2.3-3, 2.3d-1, 2.3d-0, 2.3c-0, 2.3b-0, 2.2-3, 2.2-2, 2.2-1, 2.2-0, 2.1-2, 2.1-1, 2.0-1, 2.0-0, 2.0Beta10a-0, 2.0Beta9-0, 2.0Beta8-1, 2.0Beta8-0, 2.0Beta8c-1, 2.0Beta8c-0, 2.0Beta7c-0, 1.47-2, 1.47-1, 1.47-0, 1.46-1, 1.46-0, 1.44-3, 1.44-2, 1.44-1, 1.44-0, 1.43-2, 1.43-1, 1.43-0, 1.42-5, 1.42-4, 1.42-3, 1.42-2, 1.42-1, 1.40-3, 1.40-2, 1.40-1, 1.40-0, 1.37-3, 1.37-2, 1.37-1, 1.37-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• openmp

• perl

• perl-bioperl-core

• perl-file-spec

• perl-file-temp

• perl-posix

• python >=3

• samtools

• velvet

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stacks

and update with:

conda update stacks

or use the docker container:

docker pull quay.io/biocontainers/stacks:<tag>

(see stacks/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/stacks/README.html)