recipe staden_io_lib

Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM.

Homepage:

https://github.com/jkbonfield/io_lib

Documentation:

https://github.com/jkbonfield/io_lib/blob/io_lib-1-15-0/README.md

License:

BSD / BSD-3-Clause

Recipe:

/staden_io_lib/meta.yaml

Links:

biotools: staden_io_lib

package staden_io_lib

(downloads) docker_staden_io_lib

versions:
1.15.0-4,  1.15.0-3,  1.15.0-2,  1.15.0-1,  1.15.0-0,  1.14.14-9,  1.14.14-8,  1.14.14-7,  1.14.14-6, 

1.15.0-4,  1.15.0-3,  1.15.0-2,  1.15.0-1,  1.15.0-0,  1.14.14-9,  1.14.14-8,  1.14.14-7,  1.14.14-6,  1.14.14-5,  1.14.14-4,  1.14.14-3,  1.14.14-2,  1.14.14-1,  1.14.14-0,  1.14.13-1,  1.14.13-0,  1.14.12-1,  1.14.12-0,  1.14.11-1,  1.14.11-0

depends bzip2:

>=1.0.8,<2.0a0

depends libcurl:

>=8.11.1,<9.0a0

depends libdeflate:

>=1.22,<1.25.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install staden_io_lib

and update with::

   mamba update staden_io_lib

To create a new environment, run:

mamba create --name myenvname staden_io_lib

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/staden_io_lib:<tag>

(see `staden_io_lib/tags`_ for valid values for ``<tag>``)

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