recipe staphb_toolkit

A ToolKit of commonly used Public Health Bioinformatics Tools

Homepage:

https://staphb.org/staphb_toolkit/

Documentation:

https://staphb.org/staphb_toolkit

Developer docs:

https://github.com/StaPH-B/staphb_toolkit

License:

GPL / GPLv3

Recipe:

/staphb_toolkit/meta.yaml

package staphb_toolkit

versions:

2.0.1-0,  2.0.0-0,  1.3.10-0,  1.3.9-0,  1.3.8-0,  1.3.7-0,  1.3.6-0

depends docker-py:

>=4.1.0

depends openjdk:

depends pexpect:

>=4.8

depends psutil:

>=5.6.3

depends pyfiglet:

>=0.8.post1

depends python:

>=3.6

depends rich:

>=12.4.4

depends spython:

>=0.0.73

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install staphb_toolkit

and update with::

   mamba update staphb_toolkit

To create a new environment, run:

mamba create --name myenvname staphb_toolkit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/staphb_toolkit:<tag>

(see `staphb_toolkit/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/staphb_toolkit/README.html)