recipe star-fusion

STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included.

Homepage:

https://github.com/STAR-Fusion/STAR-Fusion

License:

BSD / BSD-3-Clause

Recipe:

/star-fusion/meta.yaml

package star-fusion

Versions:

1.12.0-1,  1.12.0-0,  1.11.1-0,  1.10.0-1,  1.10.0-0,  1.9.1-1,  1.9.1-0,  1.9.0-1,  1.9.0-0, 

1.12.0-1,  1.12.0-0,  1.11.1-0,  1.10.0-1,  1.10.0-0,  1.9.1-1,  1.9.1-0,  1.9.0-1,  1.9.0-0,  1.8.1-2,  1.8.1-1,  1.8.1-0,  1.7.0-1,  1.7.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.3.2-2,  1.3.2-1,  1.3.2-0,  1.2.0-0,  1.1.0-0,  1.0.0-0,  0.7.0-1,  0.7.0-0,  0.5.4-2,  0.5.4-1,  0.5.4-0,  0.5.3-0,  0.4.0-0

Depends:

• bbmap

• blast

• bzip2

• gmap

• htslib

• igv-reports

• openssl

• perl

• perl-carp

• perl-carp-assert

• perl-db-file

• perl-io-gzip

• perl-json-xs

• perl-set-intervaltree

• perl-uri

• python

• samtools <1.10

• star 2.7.8a

• trinity <2.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install star-fusion

and update with:

conda update star-fusion

or use the docker container:

docker pull quay.io/biocontainers/star-fusion:<tag>

(see star-fusion/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/star-fusion/README.html)