recipe star

An RNA-seq read aligner.

Homepage:

https://github.com/alexdobin/STAR

License:

GPLv3

Recipe:

/star/meta.yaml

Links:

biotools: star, usegalaxy-eu: rna_starsolo, usegalaxy-eu: rna_star

package star

Versions:

2.7.10b-1,  2.7.10b-0,  2.7.10a-0,  2.7.9a-0,  2.7.8a-1,  2.7.8a-0,  2.7.7a-0,  2.7.6a-0,  2.7.5c-0, 

2.7.10b-1,  2.7.10b-0,  2.7.10a-0,  2.7.9a-0,  2.7.8a-1,  2.7.8a-0,  2.7.7a-0,  2.7.6a-0,  2.7.5c-0,  2.7.5b-0,  2.7.5a-0,  2.7.4a-0,  2.7.3a-0,  2.7.2c-0,  2.7.2b-0,  2.7.2a-0,  2.7.1a-0,  2.7.0f-0,  2.7.0e-0,  2.7.0d-0,  2.7.0b-0,  2.6.1d-1,  2.6.1d-0,  2.6.1b-0,  2.6.1a-1,  2.6.0c-3,  2.6.0c-2,  2.6.0c-1,  2.6.0c-0,  2.6.0b-0,  2.5.4a-0,  2.5.3a-0,  2.5.2b-0,  2.5.2a-0,  2.5.1b-0,  2.5.0c-0,  2.5.0b-0,  2.5.0a-0,  2.4.2a-0,  2.4.0j-2,  2.4.0j-1,  2.4.0j-0

Depends:

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

Required By:

• squire

• drop

• star-fusion

• knock-knock

• clinker

• riboraptor

• rnaquast

• mockinbird

• rmats

• icount

• fusioncatcher

• tritimap

• fusion-inspector

• imfusion

• circtools

• fusion-filter

• rpbp

• discasm

• ctat-mutations

• arriba

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install star

and update with:

conda update star

or use the docker container:

docker pull quay.io/biocontainers/star:<tag>

(see star/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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