recipe starfish

standardized analysis pipeline for image-based transcriptomics

Homepage

https://github.com/spacetx/starfish

License

MIT

Recipe

/starfish/meta.yaml

package starfish

(downloads) docker_starfish

Versions

0.1.1-0, 0.1.0-0, 0.0.31-0, 0.0.30-0, 0.0.29-0, 0.0.27-0, 0.0.26-2, 0.0.25-2, 0.0.23-2, 0.0.21-2, 0.0.20-2, 0.0.19-2, 0.0.18-2, 0.0.17-2, 0.0.16-2, 0.0.14-2, 0.0.14-1, 0.0.14-0

Depends click

Depends jsonschema

Depends matplotlib

Depends numpy

!=1.13.0

Depends pandas

>=0.23.4

Depends pytest

>=3.6.3

Depends python

>=3.6

Depends regional

Depends requests

Depends scikit-image

>=0.14.0

Depends scikit-learn

Depends scipy

Depends seaborn

Depends semantic_version

Depends showit

>=1.1.4

Depends slicedimage

>=3.1.1

Depends sympy

Depends tqdm

Depends trackpy

Depends validators

Depends xarray

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install starfish

and update with:

conda update starfish

or use the docker container:

docker pull quay.io/biocontainers/starfish:<tag>

(see starfish/tags for valid values for <tag>)