recipe straglr

Short-tandem repeat genotyping using long reads

Homepage:

https://github.com/bcgsc/straglr

License:

GPL3 / MIT License

Recipe:

/straglr/meta.yaml

Links:

doi: 10.1186/s13059-021-02447-3

package straglr

Versions:

1.4.1-0,  1.4.0-0,  1.3.0-0,  1.2.0-0,  1.1.1-0

Depends:

• blast

• intspan >=1.5.8

• numpy >=1.14.2

• pathos >=0.2.3

• pybedtools >=0.7.9

• pysam >=0.14.0

• python

• scikit-learn >=0.19.0

• scipy >=1.0.1

• trf

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install straglr

and update with:

conda update straglr

or use the docker container:

docker pull quay.io/biocontainers/straglr:<tag>

(see straglr/tags for valid values for <tag>)

Download stats

Link to this page

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