- recipe straindesign
Library to perform metabolic engineering tasks
- Homepage:
- License:
MIT
- Recipe:
- package straindesign¶
- Versions:
3.2.3-0,3.2.2-0,3.2.0-0,3.1.0-0,3.0.0-0- Depends:
on biopython
on blessings
on cobra
>=0.24on escher
on future
on gnomic
on inspyred
on iprogress
on lazy-object-proxy
on networkx
on numexpr
on openbabel
on openpyxl
on ordered-set
on palettable
on pandas
on plotly
on python
>=3.8on redis-py
on requests
on scipy
on seaborn
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install straindesign
to add into an existing workspace instead, run:
pixi add straindesign
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install straindesign
Alternatively, to install into a new environment, run:
conda create -n envname straindesign
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/straindesign:<tag>
(see straindesign/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/straindesign/README.html)
