recipe strainflye

Pipeline for analyzing rare mutations in metagenomes assembled using long and accurate reads

Homepage:

https://github.com/fedarko/strainFlye

License:

BSD / BSD-3-Clause

Recipe:

/strainflye/meta.yaml

package strainflye

Versions:

0.2.0-0

Depends:

• bcftools >=1.7,<1.10

• click >=8.0

• htslib >=1.9,<1.10.0a0

• minimap2 >=2.10

• networkx

• numpy

• pandas >=1.0

• prodigal

• pysam <0.16

• pysamstats

• python >=3.6,<3.8

• samtools >=1.7,<1.10

• scikit-bio

• scipy >=1.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install strainflye

and update with:

conda update strainflye

or use the docker container:

docker pull quay.io/biocontainers/strainflye:<tag>

(see strainflye/tags for valid values for <tag>)

Download stats

Link to this page

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