recipe stranger

Annotate VCF files with STR variants with pathogenicity implications.

Homepage:

https://github.com/Clinical-Genomics/stranger

Documentation:

https://github.com/Clinical-Genomics/stranger/blob/v0.9.3/README.md

License:

MIT / MIT

Recipe:

/stranger/meta.yaml

package stranger

(downloads) docker_stranger

versions:

0.9.3-0,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.1-0

depends click:

depends coloredlogs:

depends importlib-resources:

>=5.12.0

depends python:

>=3.7

depends pyyaml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install stranger

and update with::

   mamba update stranger

To create a new environment, run:

mamba create --name myenvname stranger

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/stranger:<tag>

(see `stranger/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/stranger/README.html)