recipe stream_atac

STREAM-Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data. Preprocessing steps for single cell atac-seq data.

Homepage

https://github.com/pinellolab/STREAM_atac

License

Affero

Recipe

/stream_atac/meta.yaml

package stream_atac

(downloads) docker_stream_atac

Versions

0.3.3-0, 0.3.3a-0, 0.3.2-0, 0.3.1-1, 0.3.1-0, 0.3.0-0, 0.2.0-1, 0.2.0-0, 0.1.0-0

Depends anndata

Depends bioconductor-chromvar

1.4.1.*

Depends conda

Depends libgcc-ng

>=7.3.0

Depends libgfortran-ng

>=7,<8.0a0

Depends libstdcxx-ng

>=7.3.0

Depends openssl

>=1.1.1a,<1.1.2a

Depends perl

>=5.26.2,<5.26.3.0a0

Depends python

>=3.6,<3.7.0a0

Depends r-essentials

Depends rpy2

Depends scikit-learn

Depends setuptools

Depends unzip

Depends wget

Depends zip

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stream_atac

and update with:

conda update stream_atac

or use the docker container:

docker pull quay.io/biocontainers/stream_atac:<tag>

(see stream_atac/tags for valid values for <tag>)