recipe stringdecomposer

A tool for decomposing of strings into a set of given monomers

Homepage:

https://github.com/ablab/stringdecomposer

License:

GPL / GPLv2

Recipe:

/stringdecomposer/meta.yaml

StringDecomposer (SD) algorithm takes the set of monomers and a long error-prone read (or a genomic segment) and partitions this read into distinct monomers.

package stringdecomposer

Versions:

1.1.2-1,  1.1.2-0,  1.1.1-1,  1.1.1-0,  1.1.0-0,  1.0.0-1,  1.0.0-0,  0.1.0-0

Depends:

• _openmp_mutex >=4.5

• biopython

• libgcc-ng >=12

• libstdcxx-ng >=12

• pandas

• python >=3.10,<3.11.0a0

• python-edlib

• python_abi 3.10.* *_cp310

Required By:

• hormon

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install stringdecomposer

and update with:

conda update stringdecomposer

or use the docker container:

docker pull quay.io/biocontainers/stringdecomposer:<tag>

(see stringdecomposer/tags for valid values for <tag>)

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Link to this page

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