recipe structure

The program structure is a free software package for using multi-locus genotype data to investigate population structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. It can be applied to most of the commonly-used genetic markers, including SNPS, microsatellites, RFLPs and AFLPs.

Homepage:

https://web.stanford.edu/group/pritchardlab/structure.html

License:

MIT

Recipe:

/structure/meta.yaml

Links:

biotools: Structure

package structure

(downloads) docker_structure

versions:

2.3.4-7,  2.3.4-6,  2.3.4-5,  2.3.4-4,  2.3.4-3,  2.3.4-2,  2.3.4-1,  2.3.4-0

depends libgcc:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install structure

and update with::

   mamba update structure

To create a new environment, run:

mamba create --name myenvname structure

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/structure:<tag>

(see `structure/tags`_ for valid values for ``<tag>``)

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Link to this page

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