recipe sumaclust

Sumaclust clusters sequences in a way that is fast and exact at the same time, using the same clustering algorithm as UCLUST and CD-HIT. For more information see url.

Homepage:

https://git.metabarcoding.org/obitools/sumaclust/wikis/home

License:

CeCILL FREE SOFTWARE LICENSE AGREEMENT

Recipe:

/sumaclust/meta.yaml

package sumaclust

(downloads) docker_sumaclust

versions:

1.0.31-7,  1.0.31-6,  1.0.31-5,  1.0.31-4,  1.0.31-3,  1.0.31-2,  1.0.31-1,  1.0.31-0

depends libgcc:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sumaclust

and update with::

   mamba update sumaclust

To create a new environment, run:

mamba create --name myenvname sumaclust

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sumaclust:<tag>

(see `sumaclust/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sumaclust/README.html)