recipe svanalyzer

SVanalyzer: tools for the analysis of structural variation in genomes

Homepage:

http://svanalyzer.readthedocs.io/

License:

CC0

Recipe:

/svanalyzer/meta.yaml

package svanalyzer

(downloads) docker_svanalyzer

versions:

0.36-2,  0.36-1,  0.36-0,  0.35-0,  0.34-0,  0.33-0,  0.32-0,  0.31-0,  0.3-0

depends bedtools:

depends edlib:

depends mummer:

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-list-moreutils:

depends perl-log-log4perl:

depends samtools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install svanalyzer

and update with::

   mamba update svanalyzer

To create a new environment, run:

mamba create --name myenvname svanalyzer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/svanalyzer:<tag>

(see `svanalyzer/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/svanalyzer/README.html)