recipe svhip

Retrainable machine learning pipeline for the detection of secondary structure conservation on a genome-level.

Homepage:

https://github.com/chrisBioInf/Svhip

License:

MIT

Recipe:

/svhip/meta.yaml

package svhip

Versions:

1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends:

• biopython >=1.79

• blosum >=1.1.3

• clustalw >=2.1.0

• matplotlib-base >=3.5.1

• scikit-learn 1.1.3

• scipy >=1.8.0

• seaborn >=0.11.2

• viennarna >=2.5.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install svhip

and update with:

conda update svhip

or use the docker container:

docker pull quay.io/biocontainers/svhip:<tag>

(see svhip/tags for valid values for <tag>)

Download stats

Link to this page

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