recipe svim-asm

SVIM-asm is a fork of the SV caller SVIM for genome-genome alignments.

Homepage:

https://github.com/eldariont/svim-asm

License:

GPL / GPL-3.0

Recipe:

/svim-asm/meta.yaml

package svim-asm

versions:

1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.1.0-0

depends matplotlib-base:

depends numpy:

depends pysam:

>=0.15

depends python:

>=3.6

depends python-edlib:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install svim-asm

and update with::

   mamba update svim-asm

To create a new environment, run:

mamba create --name myenvname svim-asm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/svim-asm:<tag>

(see `svim-asm/tags`_ for valid values for ``<tag>``)

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Link to this page

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