recipe swga

Select primer sets for selective whole genome amplification (SWGA)

Homepage:

https://github.com/eclarke/swga

License:

GPL / GPL-3.0

Recipe:

/swga/meta.yaml

package swga

versions:

0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.3.p1-0,  0.4.2-1,  0.4.2-0

depends argutils:

depends click:

depends libcxx:

>=11.1.0

depends llvm-openmp:

>=11.1.0

depends melt:

depends peewee:

>=2.7.3,<3.0

depends pyfaidx:

>0.4.5.2

depends pytest:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27m

depends pyyaml:

depends semantic_version:

depends workspace:

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install swga

and update with::

   mamba update swga

To create a new environment, run:

mamba create --name myenvname swga

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/swga:<tag>

(see `swga/tags`_ for valid values for ``<tag>``)

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