recipe sylph-tax

Integrating taxonomic information into the sylph metagenome profiler.

Homepage:

https://github.com/bluenote-1577/sylph-tax

Documentation:

https://github.com/bluenote-1577/sylph-tax/blob/v1.1.0/README.md

License:

MIT / MIT

Recipe:

/sylph-tax/meta.yaml

package sylph-tax

(downloads) docker_sylph-tax

versions:

1.1.0-0,  1.0.0-0

depends pandas:

depends python:

>3

depends requests:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sylph-tax

and update with::

   mamba update sylph-tax

To create a new environment, run:

mamba create --name myenvname sylph-tax

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sylph-tax:<tag>

(see `sylph-tax/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sylph-tax/README.html)