- recipe synapseclient
Python client for Synapse.
- Homepage:
- Documentation:
- Developer docs:
- License:
APACHE / Apache-2.0
- Recipe:
A client for Synapse, a collaborative compute space that allows scientists to share and analyze data together.
- package synapseclient¶
- Versions:
4.11.0-0,4.10.0-0,4.9.0-0,4.5.0-0,4.4.1-0,4.4.0-0,4.3.1-0,4.3.0-0,4.2.0-0,4.11.0-0,4.10.0-0,4.9.0-0,4.5.0-0,4.4.1-0,4.4.0-0,4.3.1-0,4.3.0-0,4.2.0-0,4.1.1-0,4.1.0-0,4.0.0-0,3.2.0-0,3.1.1-0,3.1.0-0,3.0.0-0,2.7.2-0,2.7.1-0,2.7.0-0,2.6.0-0,2.5.1-0,2.5.0-0,2.4.0-0,2.3.1-0,2.3.0-0,2.2.2-0,2.2.0-0,2.1.1-0,2.1.0-0,2.0.0-0,1.9.4-0,1.9.3-0,1.7.5-1,1.7.5-0,1.7.1-0,1.6.2-0,1.5-0- Depends:
on async-lru
on asyncio-atexit
on deprecated
>=1.2.4on httpx
on loky
on nest-asyncio
on opentelemetry-api
on opentelemetry-exporter-otlp-proto-http
on opentelemetry-instrumentation
on opentelemetry-instrumentation-httpx
on opentelemetry-instrumentation-requests
on opentelemetry-instrumentation-threading
on opentelemetry-instrumentation-urllib
on opentelemetry-sdk
on psutil
on python
>=3.9,<3.13on requests
>=2.22on tqdm
on urllib3
<2
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install synapseclient
to add into an existing workspace instead, run:
pixi add synapseclient
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install synapseclient
Alternatively, to install into a new environment, run:
conda create -n envname synapseclient
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/synapseclient:<tag>
(see synapseclient/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/synapseclient/README.html)
