recipe table2asn

table2asn is a command-line program that creates sequence records for submission to GenBank - replaces tbl2asn.

Homepage:

https://www.ncbi.nlm.nih.gov/genbank/table2asn

Documentation:

https://ftp.ncbi.nlm.nih.gov/asn1-converters/by_program/table2asn/DOCUMENTATION/table2asn_readme.txt

License:

Public Domain

Recipe:

/table2asn/meta.yaml

package table2asn

(downloads) docker_table2asn

versions:

1.28.1179-0,  1.28.1111-0,  1.28.943-0,  1.27.792-0,  1.0.883-0

depends bzip2:

>=1.0.8,<2.0a0

depends libzlib:

>=1.2.13,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install table2asn

and update with::

   mamba update table2asn

To create a new environment, run:

mamba create --name myenvname table2asn

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/table2asn:<tag>

(see `table2asn/tags`_ for valid values for ``<tag>``)

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Link to this page

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