recipe tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data.

Homepage:

http://sgt.cnag.cat/3dg/tadbit/

License:

GPL-3.0

Recipe:

/tadbit/meta.yaml

Links:

doi: 10.1371/journal.pcbi.1005665

package tadbit

versions:

1.0.1-1,  1.0.1-0,  1.0-1,  1.0-0,  0.5-1,  0.5-0

depends future:

depends gem3-mapper:

depends h5py:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends matplotlib-base:

depends mcl:

depends numpy:

depends pysam:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends samtools:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tadbit

and update with::

   mamba update tadbit

To create a new environment, run:

mamba create --name myenvname tadbit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tadbit:<tag>

(see `tadbit/tags`_ for valid values for ``<tag>``)

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