recipe tadlib

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

Homepage:

https://github.com/XiaoTaoWang/TADLib/

License:

GPL3 / GPLv3

Recipe:

/tadlib/meta.yaml

package tadlib

versions:

0.4.5.post1-0

depends cooler:

depends matplotlib-base:

depends numpy:

depends pomegranate:

depends python:

>=3.5

depends python_abi:

depends scikit-learn:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tadlib

and update with::

   mamba update tadlib

To create a new environment, run:

mamba create --name myenvname tadlib

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tadlib:<tag>

(see `tadlib/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tadlib/README.html)