recipe tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data

Homepage:

https://github.com/vaquerizaslab/tadtool

License:

MIT / MIT License

Recipe:

/tadtool/meta.yaml

package tadtool

versions:

0.84-0,  0.82-0,  0.81-1,  0.81-0,  0.80-0,  0.79-0,  0.78-0,  0.77-0,  0.75-1, 

0.84-0,  0.82-0,  0.81-1,  0.81-0,  0.80-0,  0.79-0,  0.78-0,  0.77-0,  0.75-1,  0.75-0

depends future:

depends matplotlib-base:

depends numpy:

>=1.9.0

depends progressbar2:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tadtool

and update with::

   mamba update tadtool

To create a new environment, run:

mamba create --name myenvname tadtool

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tadtool:<tag>

(see `tadtool/tags`_ for valid values for ``<tag>``)

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