recipe tajimas_d

Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences.

Homepage:

https://github.com/not-a-feature/tajimas_d

License:

GPL3 / GPL-3.0-or-later

Recipe:

/tajimas_d/meta.yaml

Tajima's D is a population genetic test statistic that computes the difference between the mean number of pairwise differences and the number of segregating sites. It is used to determine whether a population is expanding or shrinking.

package tajimas_d

(downloads) docker_tajimas_d

versions:

2.0.2-0,  2.0.1-0,  2.0.0-0

depends python:

>=3.8

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tajimas_d

and update with::

   mamba update tajimas_d

To create a new environment, run:

mamba create --name myenvname tajimas_d

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tajimas_d:<tag>

(see `tajimas_d/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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