recipe tantan

tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences.

Homepage:

https://gitlab.com/mcfrith/tantan

Documentation:

https://gitlab.com/mcfrith/tantan/-/blob/main/README.rst

License:

GPL3 / GPL-3.0-or-later

Recipe:

/tantan/meta.yaml

Links:

doi: 10.1093/nar/gkq1212

package tantan

(downloads) docker_tantan

versions:
51-1,  51-0,  50-0,  49-0,  40-2,  40-1,  40-0,  39-0,  34-0, 

51-1,  51-0,  50-0,  49-0,  40-2,  40-1,  40-0,  39-0,  34-0,  32-0,  31-0,  26-2,  26-1,  26-0,  13-2,  13-1,  13-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tantan

and update with::

   mamba update tantan

To create a new environment, run:

mamba create --name myenvname tantan

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tantan:<tag>

(see `tantan/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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