recipe tapestry

Validate and edit small eukaryotic genome assemblies

Homepage:

https://github.com/johnomics/tapestry

License:

MIT / MIT

Recipe:

/tapestry/meta.yaml

package tapestry

versions:

1.0.1-0,  1.0.0-0,  0.9.3-1,  0.9.3-0,  0.9.2-0,  0.9.1-0

depends biopython:

depends intervaltree:

depends jinja2:

depends minimap2:

depends numpy:

depends pandas:

depends plumbum:

depends pysam:

depends python:

>=3

depends samtools:

depends sqlalchemy:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tapestry

and update with::

   mamba update tapestry

To create a new environment, run:

mamba create --name myenvname tapestry

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tapestry:<tag>

(see `tapestry/tags`_ for valid values for ``<tag>``)

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Link to this page

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