recipe targetdb

Package with an application to generate report on potential drug targets

Homepage:

https://github.com/sdecesco/targetDB

License:

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe:

/targetdb/meta.yaml

package targetdb

versions:

1.3.1-0,  1.3.0-1,  1.3.0-0

depends biopython:

<1.77

depends blast:

depends fpocket:

depends intermine:

depends matplotlib-base:

depends mysqlclient:

depends numpy:

depends opencv:

depends opentargets:

depends pandas:

>=0.25.3

depends python:

depends requests:

depends scikit-learn:

depends scipy:

depends seaborn:

depends xmltodict:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install targetdb

and update with::

   mamba update targetdb

To create a new environment, run:

mamba create --name myenvname targetdb

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/targetdb:<tag>

(see `targetdb/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/targetdb/README.html)