recipe targqc

Target capture coverage QC

Homepage

https://github.com/vladsaveliev/TargQC

License

GPL3 / GNU General Public License v3 (GPLv3)

Recipe

/targqc/meta.yaml

package targqc

(downloads) docker_targqc

Versions

1.4.4-1, 1.4.4-0

Depends beautifulsoup4

Depends bedtools

Depends bwa

Depends coverage

Depends cython

Depends gffutils

Depends ipyparallel

Depends ipython

>=4.0.0,<5.0.0

Depends ipython-cluster-helper

Depends joblib

Depends lxml

Depends nose

Depends numpy

Depends pandas

Depends pip

Depends pybedtools

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends qualimap

Depends sambamba

Depends setuptools

>=18.5

Depends tempita

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install targqc

and update with:

conda update targqc

or use the docker container:

docker pull quay.io/biocontainers/targqc:<tag>

(see targqc/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/targqc/README.html)