recipe targqc

Target capture coverage QC

Homepage

https://github.com/vladsaveliev/TargQC

License

GPL3 / GNU General Public License v3 (GPLv3)

Recipe

/targqc/meta.yaml

package targqc

Versions

1.8.1-0,  1.4.4-1,  1.4.4-0

Depends

• beautifulsoup4

• bedtools >=2.25

• bwa

• click

• coverage

• gffutils

• ipyparallel

• ipython

• ipython-cluster-helper

• joblib

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• lxml

• natsort

• nose

• numpy >=1.14.6,<2.0a0

• pandas

• pip

• pybedtools

• pysam

• python >=3.7,<3.8.0a0

• qualimap

• sambamba >=0.7.0

• setuptools >=18.5

• six

• tempita

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install targqc

and update with:

conda update targqc

or use the docker container:

docker pull quay.io/biocontainers/targqc:<tag>

(see targqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/targqc/README.html)