recipe targqc

Target capture coverage QC

Homepage:

https://github.com/vladsaveliev/TargQC

License:

GPL3 / GNU General Public License v3 (GPLv3)

Recipe:

/targqc/meta.yaml

package targqc

Versions:

1.8.1-1,  1.8.1-0,  1.4.4-1,  1.4.4-0

Depends:

• beautifulsoup4

• bedtools >=2.25

• bwa

• click

• coverage

• gffutils

• ipyparallel

• ipython

• ipython-cluster-helper

• joblib

• lxml

• natsort

• nose

• numpy

• pandas

• pip

• pybedtools

• pysam

• python >=3.6

• qualimap

• sambamba >=0.7.0

• six

• tempita

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install targqc

and update with:

conda update targqc

or use the docker container:

docker pull quay.io/biocontainers/targqc:<tag>

(see targqc/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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