- recipe taxmyphage
Script to assign taxonomy to a bacteriophage at the genus and species level
- Homepage:
- License:
MIT
- Recipe:
- package taxmyphage¶
- versions:
0.3.3-0,0.3.2-0,0.3.1-0,0.3.0-0,0.2.9-0,0.2.8-0,0.2.7-0,0.2.6-0,0.2.5-0,0.3.3-0,0.3.2-0,0.3.1-0,0.3.0-0,0.2.9-0,0.2.8-0,0.2.7-0,0.2.6-0,0.2.5-0,0.2.4-0,0.2.3-0,0.2.1-0,0.2.0-0,0.1.9-0,0.1.5-0,0.1.4-0,0.1.3-0- depends biopython:
>=1.81.0,<2.0.0- depends blast:
>=2.14.0,<3.0.0- depends icecream:
>=2.1.3,<3.0.0- depends importlib-metadata:
>=6.8.0,<7.0.0- depends mash:
>=2.3,<3.0.0- depends matplotlib-base:
>=3.8.0,<4.0.0- depends networkx:
>=3.1.0,<4.0.0- depends numpy:
>=1.26.0,<2.0.0- depends openpyxl:
>=3.1.2,<4.0.0- depends pandas:
>=2.1.1,<3.0.0- depends python:
>=3.9,<3.13- depends python-wget:
>=3.2.0,<4.0.0- depends scipy:
>=1.11.3,<2.0.0- depends seaborn:
>=0.13.0,<0.14.0- depends tqdm:
>=4.66.1,<5.0.0- depends zipp:
>=3.17.0,<4.0.0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install taxmyphage and update with:: mamba update taxmyphage
To create a new environment, run:
mamba create --name myenvname taxmyphage
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/taxmyphage:<tag> (see `taxmyphage/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/taxmyphage/README.html)
