recipe taxonomy_ranks

To get taxonomy ranks information for taxid, species name, or higher ranks (e.g., genus, family) with ETE3 from NCBI Taxonomy database.

Homepage:

https://github.com/linzhi2013/taxonomy_ranks

License:

GPL3 / GPL-3.0-or-later

Recipe:

/taxonomy_ranks/meta.yaml

Links:

biotools: taxonomy_ranks

package taxonomy_ranks

versions:

0.0.10-0,  0.0.8-0,  0.0.7-0

depends ete3:

depends python:

>=2.7.15

depends six:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install taxonomy_ranks

and update with::

   mamba update taxonomy_ranks

To create a new environment, run:

mamba create --name myenvname taxonomy_ranks

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/taxonomy_ranks:<tag>

(see `taxonomy_ranks/tags`_ for valid values for ``<tag>``)

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