recipe taxtastic

Tools for taxonomic naming and annotation

Homepage:

https://github.com/fhcrc/taxtastic

License:

GPL / GPL-3.0

Recipe:

/taxtastic/meta.yaml

package taxtastic

versions:

0.10.0-1,  0.10.0-0,  0.9.3-0,  0.9.2-0,  0.9.1-0,  0.8.11-0,  0.8.9-0,  0.8.5-2,  0.8.5-0, 

0.10.0-1,  0.10.0-0,  0.9.3-0,  0.9.2-0,  0.9.1-0,  0.8.11-0,  0.8.9-0,  0.8.5-2,  0.8.5-0,  0.5.4-0

depends decorator:

depends dendropy:

depends fastalite:

depends jinja2:

depends psycopg2-binary:

depends python:

>=3

depends pyyaml:

depends sqlalchemy:

>=2

depends sqlparse:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install taxtastic

and update with::

   mamba update taxtastic

To create a new environment, run:

mamba create --name myenvname taxtastic

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/taxtastic:<tag>

(see `taxtastic/tags`_ for valid values for ``<tag>``)

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