recipe tbvcfreport

Parses SnpEff annotated M.tb VCF(s) and generates an interactive HTML-based report.

Homepage:

https://github.com/COMBAT-TB/tbvcfreport

Documentation:

https://github.com/COMBAT-TB/tbvcfreport/blob/master/README.md

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/tbvcfreport/meta.yaml

package tbvcfreport

(downloads) docker_tbvcfreport

versions:

1.0.1-0,  1.0.0-0,  0.1.10-0,  0.1.8-0,  0.1.7-0

depends click:

depends jinja2:

depends neo4j-python-driver:

depends python:

>=3.10

depends vcfpy:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tbvcfreport

and update with::

   mamba update tbvcfreport

To create a new environment, run:

mamba create --name myenvname tbvcfreport

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tbvcfreport:<tag>

(see `tbvcfreport/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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