recipe td2

TD2: a tool to find protein coding regions in transcripts

Homepage:

https://github.com/Markusjsommer/TD2

License:

MIT / MIT

Recipe:

/td2/meta.yaml

package td2

versions:

1.0.0-0

depends numpy:

>=1.24.4,<2

depends pandas:

>=2.0.3

depends psauron:

>=1.0.5

depends python:

>=3.9,<3.13

depends pytorch:

>=2.1.2

depends scipy:

>=1.10.1

depends setuptools:

depends torchaudio:

>=2.1.2

depends torchvision:

>=0.16.2

depends tqdm:

>=4.66.1

depends typing_extensions:

>=4.9.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install td2

and update with::

   mamba update td2

To create a new environment, run:

mamba create --name myenvname td2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/td2:<tag>

(see `td2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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