recipe telescope

Single locus resolution of Transposable ELEment expression.

Homepage:

https://github.com/mlbendall/telescope

License:

MIT / MIT

Recipe:

/telescope/meta.yaml

Links:

doi: 10.1101/398172

package telescope

versions:

1.0.3-5,  1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0

depends future:

>=0.17.1

depends htslib:

>=1.15.1,<1.22.0a0

depends intervaltree:

>=3.0.2

depends libgcc-ng:

>=12

depends numpy:

>=1.23.1,<2.0a0

depends pysam:

>=0.15.2

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends pyyaml:

>=5.1

depends scipy:

>=1.2.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install telescope

and update with::

   mamba update telescope

To create a new environment, run:

mamba create --name myenvname telescope

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/telescope:<tag>

(see `telescope/tags`_ for valid values for ``<tag>``)

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