recipe tepeaks

Package for including repetitive regions in peak calling from ChIP-seq datasets.

Homepage:

http://hammelllab.labsites.cshl.edu/software/#TEpeaks

License:

GPL3 / GPL3

Recipe:

/tepeaks/meta.yaml

package tepeaks

versions:

0.1-7,  0.1-6,  0.1-5,  0.1-4,  0.1-3,  0.1-2,  0.1-1,  0.1-0

depends boost-cpp:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends ncurses:

>=6.5,<7.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tepeaks

and update with::

   mamba update tepeaks

To create a new environment, run:

mamba create --name myenvname tepeaks

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tepeaks:<tag>

(see `tepeaks/tags`_ for valid values for ``<tag>``)

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Link to this page

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