recipe tesorter

Lineage-level classification of transposable elements using conserved protein domains.

Homepage:

https://github.com/zhangrengang/TEsorter

Documentation:

https://github.com/zhangrengang/TEsorter/blob/v1.4.7/README.md

License:

GPL3 / GPL-3.0-or-later

Recipe:

/tesorter/meta.yaml

Links:

doi: 10.1093/hr/uhac017, biotools: TEsorter

package tesorter

(downloads) docker_tesorter

versions:

1.4.7-0,  1.4.6-1,  1.4.6-0,  1.3.0-0,  1.2.5.2-0

depends biopython:

depends blast:

depends drmaa:

depends hmmer:

depends pp:

depends python:

>=3

depends xopen:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tesorter

and update with::

   mamba update tesorter

To create a new environment, run:

mamba create --name myenvname tesorter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tesorter:<tag>

(see `tesorter/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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