recipe tiddit

TIDDIT - structural variant calling.

Homepage:

https://github.com/SciLifeLab/TIDDIT

Documentation:

https://github.com/SciLifeLab/TIDDIT/blob/TIDDIT-3.9.0/README.md

License:

GPL3 / GPL-3.0-only

Recipe:

/tiddit/meta.yaml

package tiddit

(downloads) docker_tiddit

versions:
3.9.0-0,  3.7.0-0,  3.6.1-2,  3.6.1-1,  3.6.1-0,  3.6.0-1,  3.6.0-0,  3.4.0-0,  3.3.2-0, 

3.9.0-0,  3.7.0-0,  3.6.1-2,  3.6.1-1,  3.6.1-0,  3.6.0-1,  3.6.0-0,  3.4.0-0,  3.3.2-0,  3.3.1-0,  3.3.0-0,  3.2.1-0,  3.1.0-1,  3.1.0-0,  3.0.0-1,  3.0.0-0,  2.12.1-0,  2.12.0-4,  2.12.0-3,  2.12.0-2,  2.12.0-1,  2.12.0-0,  2.11.0-1,  2.11.0-0,  2.10.0-0,  2.8.1-2,  2.8.1-1,  2.8.1-0,  2.8.0-0,  2.7.1-1,  2.7.1-0,  2.6.0-0

depends bwa:

depends fermi2:

depends joblib:

depends libgcc:

>=13

depends numpy:

>=1.22.4,<2.0a0

depends pysam:

>=0.22.1,<0.23.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends ropebwt2:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tiddit

and update with::

   mamba update tiddit

To create a new environment, run:

mamba create --name myenvname tiddit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tiddit:<tag>

(see `tiddit/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tiddit/README.html)