recipe tides-ml

Tool for ORF-calling and ORF-classification using ML approaches.

Homepage:

https://github.com/xxmalcala/TIdeS

License:

MIT / MIT

Recipe:

/tides-ml/meta.yaml

package tides-ml

versions:

1.3.5-0,  1.3.4-1,  1.3.4-0,  1.3.2-0,  1.3.0-0,  1.2.0-0,  1.1.4-0,  1.1.3-0,  1.1.2-0

depends barrnap:

>=0.9

depends biopython:

1.79

depends cd-hit:

>=4.8.1

depends diamond:

>=2.1.3

depends ete3:

>=3.1.2

depends kraken2:

>=2.1.0

depends optuna:

>=3.1.1

depends pandas:

2.1.1

depends python:

>=3.7,<=3.11

depends scikit-learn:

>=1.5.0

depends seaborn-base:

>=0.12.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tides-ml

and update with::

   mamba update tides-ml

To create a new environment, run:

mamba create --name myenvname tides-ml

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tides-ml:<tag>

(see `tides-ml/tags`_ for valid values for ``<tag>``)

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