recipe tigmint

Correct misassemblies using linked reads

Homepage

https://bcgsc.github.io/tigmint/

Documentation

https://github.com/bcgsc/tigmint#readme

Developer docs

https://github.com/bcgsc/tigmint

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/tigmint/meta.yaml

Links

doi: 10.1101/304253

package tigmint

Versions

1.2.2-0,  1.2.1-0,  1.1.2-0

Depends

• intervaltree

• make

• minimap2

• pybedtools

• pysam >=0.15.3

• python >=3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tigmint

and update with:

conda update tigmint

or use the docker container:

docker pull quay.io/biocontainers/tigmint:<tag>

(see tigmint/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tigmint/README.html)