recipe tigmint

Correct misassemblies using linked or long reads

Homepage:

https://bcgsc.github.io/tigmint/

Documentation:

https://github.com/bcgsc/tigmint#readme

Developer docs:

https://github.com/bcgsc/tigmint

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/tigmint/meta.yaml

Links:

doi: 10.1101/304253

package tigmint

Versions:

1.2.6-3,  1.2.6-2,  1.2.6-1,  1.2.6-0,  1.2.5-1,  1.2.5-0,  1.2.4-1,  1.2.4-0,  1.2.3-0, 

1.2.6-3,  1.2.6-2,  1.2.6-1,  1.2.6-0,  1.2.5-1,  1.2.5-0,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-1,  1.2.2-0,  1.2.1-0,  1.1.2-0

Depends:

• _openmp_mutex >=4.5

• bwa

• intervaltree

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• make

• minimap2

• pybedtools

• pysam >=0.15.3

• python >=3.8,<3.9.0a0

• python_abi 3.8.* *_cp38

• samtools

• zsh

Required By:

• goldrush

• longstitch

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tigmint

and update with:

conda update tigmint

or use the docker container:

docker pull quay.io/biocontainers/tigmint:<tag>

(see tigmint/tags for valid values for <tag>)

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