Package Recipe 'tin-score-calculation'

recipe tin-score-calculation

Given a set of BAM files and a gene annotation BED file, calculates the Transcript Integrity Number (TIN) for each transcript.

Homepage:: The package home page
License:: GPL3 / GNU General Public License v3.0
Recipe:: /tin-score-calculation/meta.yaml

package tin-score-calculation¶

Versions:

0.6.3-0, 0.6.2-0, 0.6.0-0, 0.5.1-0, 0.5-0, 0.4-0

Depends:

bx-python >=0.8.10
guppy3 >=3
matplotlib-base
pandas >=0.25
psutil >=5.8.0
pysam >=0.16
python
rseqc >=3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tin-score-calculation

and update with:

conda update tin-score-calculation

or use the docker container:

docker pull quay.io/biocontainers/tin-score-calculation:<tag>

(see tin-score-calculation/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tin-score-calculation/README.html)