recipe tiny-count

\ A precision counting tool for hierarchical classification and quantification of small RNA-seq reads. tiny-count is part of the tinyRNA analysis pipeline.

Homepage:

https://github.com/MontgomeryLab/tinyRNA

License:

GPLv3

Recipe:

/tiny-count/meta.yaml

package tiny-count

versions:

1.5.0-1,  1.5.0-0,  1.4.0-0,  1.3.0-1,  1.3.0-0,  1.2.1-0,  1.2.0_patch1-0

depends htseq:

2.0.2.*

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends numpy:

1.23.1.*

depends pandas:

1.4.3.*

depends python:

>=3.9,<3.10.0a0

depends python_abi:

3.9.* *_cp39

depends ruamel.yaml:

0.17.16.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tiny-count

and update with::

   mamba update tiny-count

To create a new environment, run:

mamba create --name myenvname tiny-count

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tiny-count:<tag>

(see `tiny-count/tags`_ for valid values for ``<tag>``)

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