- recipe tirmite
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
MIT / MIT License
Build profile Hidden Markov Models for Terminal Inverted repeat families (TIR-pHMMs) and map to genomic sequences for annotation of MITES and complete DNA-Transposons with variable internal sequence composition.
- package tirmite¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install tirmite and update with:: mamba update tirmite
To create a new environment, run:
mamba create --name myenvname tirmite
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/tirmite:<tag> (see `tirmite/tags`_ for valid values for ``<tag>``)