tirmite

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Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

Home https://github.com/Adamtaranto/TIRmite
Versions 1.1.0, 1.1.1, 1.1.3
License MIT License
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tirmite

Build profile Hidden Markov Models for Terminal Inverted repeat families (TIR-pHMMs) and map to genomic sequences for annotation of MITES and complete DNA-Transposons with variable internal sequence composition.

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tirmite

and update with:

conda update tirmite

docker

A Docker container is available at https://quay.io/repository/biocontainers/tirmite.