recipe tmhg

tMHG-Finder is a tree-guided tool to partition whole genomes into maximal homologous groups.

Homepage:

https://github.com/yongze-yin/tMHG-Finder/

License:

MIT

Recipe:

/tmhg/meta.yaml

package tmhg

versions:

1.0.1-0

depends bedtools:

>=2.31.1

depends biopython:

depends blast:

depends dendropy:

depends mafft:

depends mash:

depends networkx:

depends numpy:

>=1.11

depends pandas:

>=1.1.3

depends pathos:

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tmhg

and update with::

   mamba update tmhg

To create a new environment, run:

mamba create --name myenvname tmhg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tmhg:<tag>

(see `tmhg/tags`_ for valid values for ``<tag>``)

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Link to this page

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