recipe toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

Homepage:

https://github.com/BD2KGenomics/toil

License:

Apache 2.0

Recipe:

/toil/meta.yaml

package toil

Versions:

5.9.2-0,  5.7.1-0,  5.6.0-0,  5.5.0-1,  5.5.0-0,  5.4.0-0,  5.3.0-0,  5.2.0-0,  5.1.0-0, 

5.9.2-0,  5.7.1-0,  5.6.0-0,  5.5.0-1,  5.5.0-0,  5.4.0-0,  5.3.0-0,  5.2.0-0,  5.1.0-0,  5.0.0-0,  4.2.0-0,  4.1.0-0,  4.0.0-0,  3.24.0-0,  3.23.1-0,  3.21.0-0,  3.20.0-0,  3.14.0-2,  3.14.0-1,  3.14.0-0,  3.13.0a1-0,  3.11.0-1,  3.11.0-0,  3.11.0a1-1,  3.11.0a1-0,  3.10.0-0,  3.10.0a1-1,  3.10.0a1-0,  3.9.0a1-0,  3.8.0a1-1,  3.8.0a1-0,  3.7.0a-1,  3.7.0a-0,  3.6.0-0,  3.5.0a1-3,  3.5.0a1-2,  3.5.0a1-1,  3.5.0a1-0,  3.4.0a1-3,  3.4.0a1-2,  3.4.0a1-1,  3.4.0a1-0,  3.3.0a1-0,  3.2.0a2-2,  3.2.0a2-0

Depends:

• addict >=2.2.1,<2.5

• apache-libcloud >=2.2.1,<3

• cwltool 3.1.20221201130942

• dill >=0.3.2,<0.4

• docker-py >=3.7.2,<6

• galaxy-tool-util

• google-cloud-storage >=1.6.0,<2

• idna >=2

• networkx >=2,<2.8.5

• psutil >=3.0.1,<6

• pynacl >=1.4.0,<2

• pypubsub >=4.0.3,<5

• python >=3.7

• python-dateutil

• python-htcondor >=10.2.0.post1,<11

• python-kubernetes >=12.0.1,<22

• pytz >=2012

• requests >=2,<3

• ruamel.yaml >=0.15,<=0.17.21

• ruamel.yaml.clib >=0.2.6

• schema-salad >=8.4.20230128170514,<9

Required By:

• cactus

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install toil

and update with:

conda update toil

or use the docker container:

docker pull quay.io/biocontainers/toil:<tag>

(see toil/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/toil/README.html)