- recipe toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
- Homepage:
- Documentation:
- Developer docs:
- License:
APACHE / Apache-2.0
- Recipe:
- package toil¶
- versions:
7.0.0-0,6.1.0-0,6.0.0-0,5.12.0-0,5.11.0-0,5.9.2-0,5.7.1-0,5.6.0-0,5.5.0-1,7.0.0-0,6.1.0-0,6.0.0-0,5.12.0-0,5.11.0-0,5.9.2-0,5.7.1-0,5.6.0-0,5.5.0-1,5.5.0-0,5.4.0-0,5.3.0-0,5.2.0-0,5.1.0-0,5.0.0-0,4.2.0-0,4.1.0-0,4.0.0-0,3.24.0-0,3.23.1-0,3.21.0-0,3.20.0-0,3.14.0-2,3.14.0-1,3.14.0-0,3.13.0a1-0,3.11.0-1,3.11.0-0,3.11.0a1-1,3.11.0a1-0,3.10.0-0,3.10.0a1-1,3.10.0a1-0,3.9.0a1-0,3.8.0a1-1,3.8.0a1-0,3.7.0a-1,3.7.0a-0,3.6.0-0,3.5.0a1-3,3.5.0a1-2,3.5.0a1-1,3.5.0a1-0,3.4.0a1-3,3.4.0a1-2,3.4.0a1-1,3.4.0a1-0,3.3.0a1-0,3.2.0a2-2,3.2.0a2-0- depends addict:
>=2.2.1,<2.5- depends apache-libcloud:
>=2.2.1- depends botocore:
- depends configargparse:
>=1.7,<2- depends cwltool:
3.1.20240112164112- depends dill:
>=0.3.2,<0.4- depends docker-py:
>=3.7.2,<8- depends enlighten:
>=1.5.2,<2- depends galaxy-tool-util:
<23- depends google-cloud-storage:
>=2,<=2.8.0- depends idna:
>=2- depends miniwdl:
1.11.1- depends mypy-boto3-s3:
- depends networkx:
<4- depends psutil:
>=3.0.1,<6- depends pynacl:
>=1.4.0- depends pypubsub:
>=4.0.3,<5- depends python:
>=3.8- depends python-dateutil:
- depends python-htcondor:
>=10.2.0.post1- depends python-kubernetes:
>=12.0.1,<22- depends pytz:
>=2012- depends pyyaml:
>=6,<7- depends requests:
>=2,<3- depends ruamel.yaml:
>=0.15,<=0.18.3- depends ruamel.yaml.clib:
>=0.2.6- depends schema-salad:
>=8.4.20230128170514- depends typing-extensions:
>=4.6.2,<5- depends urllib3:
>=1.26.0,<3- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install toil and update with:: mamba update toil
To create a new environment, run:
mamba create --name myenvname toil
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/toil:<tag> (see `toil/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
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