recipe tqdist/1.0.0

computes the triplet distance between rooted trees in O(n log n) time and the quartet distance between unrooted trees in O(dn log n) time, where d degree of the tree with the smallest degree.

Homepage:

http://users-cs.au.dk/cstorm/software/tqdist/

License:

GPL / GPL

Recipe:

/tqdist/1.0.0/meta.yaml

package tqdist

(downloads) docker_tqdist

versions:

1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends libgcc-ng:

>=9.3.0

depends libstdcxx-ng:

>=9.3.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tqdist

and update with::

   mamba update tqdist

To create a new environment, run:

mamba create --name myenvname tqdist

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tqdist:<tag>

(see `tqdist/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tqdist/README.html)