recipe tracer

Tracer is a program for analysing the trace files generated by Bayesian MCMC runs (that is, the continuous parameter values sampled from the chain). It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs.

Homepage:

http://beast.community/tracer

License:

LGPLv2.1

Recipe:

/tracer/meta.yaml

Links:

biotools: tracer, doi: 10.1093/sysbio/syy032

package tracer

(downloads) docker_tracer

versions:

1.7.2-0,  1.7.1-1,  1.7.0-1,  1.7.0-0,  1.6.0-1,  1.6.0-0

depends openjdk:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tracer

and update with::

   mamba update tracer

To create a new environment, run:

mamba create --name myenvname tracer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tracer:<tag>

(see `tracer/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tracer/README.html)