recipe traitar

traitar - The microbial trait analyzer

Homepage:

https://github.com/nick-youngblut/traitar3

License:

GPL3 / GNU General Public, version 3 (GPL-3.0)

Recipe:

/traitar/meta.yaml

Traitar is a software for characterizing microbial samples from nucleotide or protein sequences

package traitar

versions:

3.0.1-0,  1.1.2-0

depends hmmer:

depends matplotlib-base:

depends numpy:

depends pandas:

>1.2,<2

depends python:

>=3.7,<3.11

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install traitar

and update with::

   mamba update traitar

To create a new environment, run:

mamba create --name myenvname traitar

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/traitar:<tag>

(see `traitar/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/traitar/README.html)