recipe transabyss

de novo assembly of RNA-Seq data using ABySS

Homepage:

https://github.com/bcgsc/transabyss

License:

GPL-3.0

Recipe:

/transabyss/meta.yaml

package transabyss

Versions:

2.0.1-7,  2.0.1-6,  2.0.1-5,  2.0.1-4,  2.0.1-3,  1.5.5-3,  1.5.5-2,  1.5.5-1,  1.5.4-1, 

2.0.1-7,  2.0.1-6,  2.0.1-5,  2.0.1-4,  2.0.1-3,  1.5.5-3,  1.5.5-2,  1.5.5-1,  1.5.4-1,  1.5.4-0

Depends:

• abyss 2.0.*

• blat

• icu 58.*

• python

• python-igraph 0.7.*

• samtools

Required By:

• pavfinder

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install transabyss

and update with:

conda update transabyss

or use the docker container:

docker pull quay.io/biocontainers/transabyss:<tag>

(see transabyss/tags for valid values for <tag>)

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