recipe transcov

A software for mapping coverage around transcription start sites

Homepage:

https://github.com/hogfeldt/transcov

Documentation:

https://transcov.readthedocs.io/en/stable/

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/transcov/meta.yaml

package transcov

(downloads) docker_transcov

versions:

1.1.3-0,  1.1.2-0,  1.1.1-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.2-0

depends attrs:

depends click:

>=7.0

depends matplotlib-base:

depends numpy:

depends pandas:

depends pysam:

depends python:

>=3.6

depends scipy:

depends seaborn:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install transcov

and update with::

   mamba update transcov

To create a new environment, run:

mamba create --name myenvname transcov

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/transcov:<tag>

(see `transcov/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/transcov/README.html)